Somehow, I feel as if I should write an article, or some kind of note for the graphic, giving an annotated list of abbreviations, pointing to other articles when possible. I don't know, however, an appropriate place to put such.
One solution is to have the graphic clickable and mousable (is that a word?). For example, when hovering over the image the acronym could be spelled out in a pop-up. When clicking on elements in the image this could lead to a related article. For an example see the template i set up as an academic exercise to see what was possible.
http://en.citizendium.org/wiki/Template:Naval_Shore_EstablishmentUsing this image mapping code it should be possible to make complex flow diagrams that are excellent navigation tools as well as clarifying the elements of the diagram to a non-expert.
Mousable? In my case, it would have to be trackballable, which might be getting uncomfortably close to violating the family friendliness policy. It might also be stylusable. While the stylus tablet (which I rarely can get to work; a software issue) does have a mouse, there is often a cat on top of the mouse. Mousing under 16-plus pounds of loudly purring cat trying to groom one's beard is a challenge.
Seriously, though, I've always wanted to try to make something "clickable".
Since you tend to have the best insight on naming, r-template information, etc., although I'm still working to grok your overall-view (it seems very good), let me bring up a question that arises from making certain things clickable. You'll see, for example, a number of boxes marked "KG", which, avoiding some esoterica, is a Key Generator, or, in more common language, an encryptor-decryptor approved for classified traffic by the National Security Agency. More often not, that's about all that is needed to be said about a KG. Does that sound like a "definition" that doesn't deserve a cluster, but also shouldn't be deprecated?
Especially in the thick alphabet soup of military and network issues, there are great numbers of abbreviations that merit only a sentence or two of explanation. Even knowing quite a bit about the different KG's, I can look at that diagram and be perfectly happy not to know if it's a KG-13, KG-34, or KG-84. There might be some reason (not too likely) to write articles about those specific KG's, but there are quite a few things, in text and graphics, that really don't need more than a very few sentences of definition and possibly a link. I greatly hesitate to create clusters for those, especially knowing that the definition will essentially repeat the "article".
Is there a way, without breaking the spirit and letter of clusters and r-templates, to have meaningful definition-only "objects"? Yes, I suppose they might need some metadata, such as workgroup and sort order, but they they are always going to be stubs, etc.